TEATIME Young Researcher Workshop – 23-24 Sep 2024, Tartu (ESTONIA)

The recent Young Researcher Workshop was organised by the COST Action 20135 TEATIME and hosted by Institute of Biomedicine and Translational Medicine, University of Tartu, Estonia (https://biomeditsiin.ut.ee/en). It was significant in fostering collaboration and knowledge exchange among emerging scientists. With 31 participants from 14 countries, the diverse lineup of experts was invited, including both TEATIME members and external specialists. This workshop provided a unique platform for young researchers to share their experiences and insights in a supportive, home-like environment.

The workshop agenda featured a wide range of scientific topics, with plenary lectures that addressed various aspects of human diseases and the translational use of laboratory rodents. Key discussions revolved around themes such as ageing and disease biomarkers, where researchers examined how animal behaviour can serve as indicators in the study of ageing. Participants explored the effects of atypical antidepressants on behaviour related to chronic early life stress, emphasizing the need to understand psychological resilience. They also discussed the side effects of the new anti-obesity drug, along with preliminary insights into rodent models for Wolfram syndrome, setting the stage for future research opportunities

The first day of the workshop was exceptionally productive, by engaging discussions that continued even during coffee breaks and lunch. This vibrant exchange of ideas not only enriched the participants’ experiences but also fostered networking opportunities that could lead to future collaborations. As the day concluded, attendees gathered for a delightful dinner in a cosy restaurant. The enthusiasm of the organisers contributed to a warm and inviting atmosphere, allowing participants to reflect on the day’s discussions and forge deeper connections.

On Day 2, the workshop shifted focus to interactive sessions centred around use of various home-cage monitoring systems. Participants shared their experience and explored obstacles and solutions in using technology for automated behavioural assessment. These discussions were enriched by excellent talks from experts emphasizing the importance of animal welfare, a critical aspect of contemporary research. One of the highlights of the day was the introduction of “TheBehaviourForum” to new participants, encouraging them to explore the platform to better understand animal behavior and underscoring the essential role of behavioral studies in advancing scientific knowledge. Another key discussion revolved around the opportunities and future possibilities for young researchers in TEATIME. This session sparked enthusiasm among participants, encouraging them to envision their roles and contributions to the organisation moving forward. The day concluded with a beautiful walking tour in Tartu Old Town and Toome Hill, where attendees could witness the rich history and culture of the European Capital of Culture for 2024.

TEATIME invited 41 experts from 13 countries to the COST headquarter in Brussels for scientific exchange and intense discussions. In recent years, we have observed that application of home cage monitoring is growing rapidly. There are now a variety of tools and applications that can already be used to track animal activity and even analyze their behavior. It became clear early on, in fact when writing the application for TEATIME, that home cage monitoring carries a huge potential for improving animal welfare.

Many of the invited researchers were already part of TEATIME, but a whole range of external experts were also involved. This was very beneficial, not only because it allows us to spread our message further, but also because it helps us to think outside the box and incorporate these perspectives into our current and future endeavors.

The overarching theme of the meeting was animal welfare and how home cage monitoring can be used to measure and improve it. We heard talks about a variety of biomarkers that can be used to automatically assess animal welfare. Beyond complex behaviors that sometimes may still require manual annotation, some of the existing systems can already measure body weight, temperature changes, respiratory rate, and urination to name just a few. But even the more complex behaviors and bodily signs included in traditional score and care sheets are subject to automatized assessment using deep learning-based solutions developed for data from video surveillance. Interestingly, we were taught that you can actually learn a lot from years of experience in automated behavioral observation of larger animals such as pigs and cattle.  

The second day of the meeting was dedicated to data. Even if the last sentence says it all, here are a few teasers: Our data must not only be collected but also named, sorted, stored, managed, provided with metadata and preferably handled according to the FAIR principles (https://www.go-fair.org/fair-principles).  If we can really get this right and manage to mine all the data treasures from the data swamp, then we truly would have a lot more time for a real tea time.

Bi-annual conference of the Federation of European Neuroscience Societies (FENS) took place on 25-29 June 2024 in Vienna, Austria. The FENS Forum 2024 was attended by ~8000 participants, representing all diversity of neuroscience research from all over the world.

Two years ago in Paris, the COST Action TEATIME introduced itself to the neuroscience community. Our social event there was attended by less than 50 people. Since then, the Action has gained momentum and visibility with several tangible outcomes achieved and we were happy that FENS accepted our proposal for another networking event in 2024, with a focus on our online discussion forum, www.TheBehaviourForum.org. This forum was launched a year ago with a goal to develop a platform for sharing information on behavioral research in laboratory animals. It includes discussions around experimental protocols, research equipment, data interpretation, animal welfare, training opportunities, conferences, job announcement and more (https://www.cost-teatime.org/about/thebehaviourforum/). The social event in Vienna aimed at promoting the use of this resource by the scientific community, attracting new active contributors, and encouraging exchange among attendees. Thanks to the activity of TEATIME members in organizing webinars, training schools, attending conferences with talks and posters, and publishing papers promoting and advocating the novel technology and best practice in monitoring the laboratory animals we have expanded the network substantially and at 7 pm on July 25 the room was fully packed with more than 150 people!

Christophe Lamy (University of Geneva, Switzerland) kicked off by informing the audience about the COST Action TEATIME (https://www.cost-teatime.org/). He was followed by Otto Kalliokoski (University of Copenhagen, Denmark) who gave a brief insight to the BehaviourForum – presenting the interface, the categories and discussion topics, with practical notes on how to get started and engaged in the discussions. Finally, Hamid Taghipourbibalan (The Arctic University of Norway in Tromso) shared his experience from two special tools that COST Actions offer for young researchers – training school and short-term scientific mission. Hamid also gave insight to his own research, where home-cage monitoring is applied in studying how the brain controls appetite and food intake.

The presentations were followed by lively informal networking that didn’t stop until the doors were closed and crowd was forced to leave the rooms. Clearly, it was a place for meeting other members of the Action, many participants of the TEATIME schools showed up and brought their colleagues along – it also meant that there was a lot to share about the basic principles of COST Actions (openness – it’s never too late to join, inclusiveness – promoting geographical diversity and gender equity, opportunities for young researchers for training and career development). Throughout the FENS conference (where several of our members presented their posters, and industrial partners were present at their exhibition booths), it became quite clear that there is still a lot to do in promoting and applying home-cage monitoring as a method to collect more data for describing and understanding the animal behaviour and physiology, at the same time ensuring good animal welfare. Also, dialogue and connections between laboratory animal scientists, data scientists and neuroscientists need to be strengthened.

It was indeed a great meeting of old friends and colleagues, but also making new connections and keeping TEATIME spirit high!

The second Advanced Training School took place in June 2024 in Berlin at the German Federal Institute for Risk Assessment (BfR). Out of 60 applicants, 22 young scientists from 13 European countries were invited to learn more about the use of home cage based technologies to monitor rodents in research. The students’ participation was fully funded by COST.  

The various presentations focused on ways to improve the standardisation and reproducibility of behavioural testing. In addition to commercially available home cage based set-ups, self-developed set-ups were presented and examples of their use were given. The importance of home cage testing for animal welfare was also discussed.

The options for building self-made systems or replicating existing ones are becoming increasingly diverse. Therefore, a workshop was held with a very simple example of how to build a simple prototype to measure activity in the home cage. Participants were guided through the building instructions step by step, so that by the end everyone had their own small device. The workshop was designed to give participants a first experience of building their own devices and to overcome any fears they might have. 

Interacting and networking with each other and the experts was an important part of the Training School. Many opportunities were provided for this, including breaks, lunches and the various evening events.

Dear colleagues,

Welcome to the first 2024 TEATIME COST Action newsletter for improving biomedical research by automated behaviour monitoring in the animal home-cage. In this edition we invite you to apply for our Grant Funding, and an update on where to find TEATIME presentations this quarter.
There is still time to apply:
Are you planning to present your work at a scientific conference in a poster or talk? Need funding for your travel, registration, and accommodation costs?
TEATIME can provide a grant for this if you are under 40 years old and affiliated to a legal entity in a COST Inclusiveness Target Country for the Conference fund.
 
Do you want to travel to another laboratory? Learning skills related to HCM?
Our grants cover travel, accommodation, and limited lab expenses to cover these visits: Short-Term Scientific Missions
 
Find our open grant calls
Our Resource page is growing!

We invite you to read some of our new resources including a Manual developed from the 1st TEATIME Advanced Training Workshop). Our website is updated regularly with new information.

Find our resources
Where to find a TEATIME presenter this quarter

Lars Lewejohann and Lior Bikovski are hosting a session at Measuring Behaviour focusing on insights and lessons learnt around Home Cage Monitoring. 

Action member Stefano Gaburro is hosting a session discussing the developing field of digital animal research. 
TEATIME at MB

TEATIME are hosting an eventing event on TheBehaviourForum.org at the Federation of European Neuroscience Societies (FENS) Forum in Vienna. Click below for more information on this and other events.

TEATIME at FENS
TEATIME Webinars

Look out for the new videos, including. Smart-Kage: the home cage monitoring system for fully automated AI-based long-term continuous phenotyping of mouse cognition and behaviour

Watch our webinars
TEATIME Reflections from Gender equality month
We were delighted to be offered the opportunity to reflect upon women representation of our COST Action and zoom in on the gender statistics of the grants we have awarded.
Read the blog
Second TEATIME HCM Advanced Training School
We have had a great response to our call for applications to join our second advanced training course. We will inform all successful applicants by 4th April. A report from the Training School will be published later this year.
Training school information
Paper with TEATIME Author contributors

We are pleased to share a paper which includes contributions from COST Action CA20135 (TEATIME) members. The paper discusses the repurposing of nonclinical in vivo data using a minimal metadata set (MNMS).

Read our paper

We hope you have found this newsletter interesting and informative. We would be very happy to hear from any of you with feedback and comments. Please also share this newsletter with your colleagues and if you have been forwarded this email and don’t want to miss future newsletters, then please subscribe. All new webinars will be announced on the website and via X 2-3 weeks before the event so please watch the space!

On behalf of all members of the TEATIME Action,

Vootele Voikar – TEATIME Chair
Sara Wells – Grant Holder, TEATIME Vice-chair
Sabine Hölter-Koch – Science Communication Coordinator

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This newsletter is based upon work from COST Action TEATIME, supported by COST (European Cooperation in Science and Technology). COST is a funding agency for research and innovation networks. Our Actions help connect research initiatives across Europe and enable scientists to grow their ideas by sharing them with their peers. This boosts their research, career, and innovation.

In celebration of International Women’s Day 2024, we are pleased to share with you insights of some of the amazing female researchers in our Action

Every year International Women’s Day is an excellent opportunity to hold on for a moment and to reflect on the specific contributions of women to our societies and our well-being, and to potentially look for role models. This year, we @COST-TEATIME asked the marvellous female scientists in the leadership of our Action what drove them to pursue a career in science, what motivates them and what they gained so far from the participation in the leadership of a COST Action. We are very happy about the responses we got and think they pretty much reflect the science-driven and collaborative spirit we perceive within our Action. Take a look at their statements and see for yourself!

Dear colleagues,

Welcome to the TEATIME COST Action newsletter for improving biomedical research by automated behaviour monitoring in the animal home-cage. In this edition we are pleased to share our year end review, as well as reports from our Hackathon and Machine Learning Workshops and the systematic review of the development and application of HCM.  
Call for 2024 Grant Applications
Our call for grants for 2024 is now open! Please visit the Grants page of the TEATIME website for more information and details on how to apply.
Find our open grant calls
Second TEATIME HCM Advanced Training School

Will be held in Berlin, Germany from 4th to 7th June 2024. Intended for Masters, PhD, and post-doctoral students, with at least 2 years’ experience in rodent behavioural research. Applications open 15 Jan 2024.

Training school information
Hackathon 2023
In October 2023 we held our first Hackathon, which brought researchers from across Europe together to work collaboratively to produce machine learning models for behaviour classification in the home cage. The models and source code will be shared on TEATIME’s GitHub.                 
Read more about this initiative
Machine Learning Workshop
In September 2023, in Jurmala, Latvia, we brought together 26 experts from 15 countries to discuss the proliferation of tools and machine learning applications allowing users to track animal movement and analyse behaviour.
Read more about this event
Grants awarded by TEATIME in 2023
This year we have been delighted to offer grants to researchers to complete 8 Short Term Scientific Missions (STSM) in a lab in a different country to their own, 3 ITC Conference Grants and 4 Dissemination Grants to attend and present at academic conferences. Reports can be found on our grant page.
Find reports from previous grants
TEATIME Webinars
Look out for the new videos, including Quantifying behaviour using deep learning. Talmo Pereira. Updates from participants at our Advanced Training School. Is that time for a renaissance of ethologically based measure of anxiety-like behaviors in rodents? 
Watch our webinars
Systematic Review of HCM

We are pleased to share a link to this review of the development and application of HCM in rodents, published in BCM Biology.

Read our paper
TEATIME and IMPC Behaviour and Sensory WG
Silvia Mandillo gave an interesting presentation where she discussed the interaction of TEATIME with the International Mouse Phenotyping Consortium (IMPC).
Presentation slides
Year End Review

Reflecting on our 2023 achievements
 
We have had a full program across 2023 and we are delighted to share our reflections on this year here:

Read our review

We hope you have found this newsletter interesting and informative. We would be very happy to hear from any of you with feedback and comments. Please also share this newsletter with your colleagues and if you have been forwarded this email and don’t want to miss future newsletters, then please subscribe. All new webinars will be announced on the website and via X 2-3 weeks before the event so please watch the space!

On behalf of all members of the TEATIME Action,

Vootele Voikar – TEATIME Chair
Sara Wells – Grant Holder, TEATIME Vice-chair
Sabine Hölter-Koch – Science Communication Coordinator
Twitter
LinkedIn
YouTube
Website
Website
This newsletter is based upon work from COST Action TEATIME, supported by COST (European Cooperation in Science and Technology). COST is a funding agency for research and innovation networks. Our Actions help connect research initiatives across Europe and enable scientists to grow their ideas by sharing them with their peers. This boosts their research, career, and innovation.

This autumn we have unveiled a comprehensive paper delving into the transformative potential of home-cage monitoring technology (HCM) in the realm of biomedical animal research. Traditionally, laboratory rodents undergo individual examinations in external test apparatuses at specific time points, a practice that may overlook crucial data influenced by various factors. To address these limitations, the research community has increasingly turned to longitudinally monitoring mice and rats within their home cages. The recently published systematic review, drawing insights from 521 publications sourced from PubMed and Web of Science, sheds light on the evolution of HCM and its current state-of-the-art applications.

Over the covered period, numerous studies have shown a remarkable enhancement in techniques for HCM of mice and rats. The ongoing development signifies a promising trajectory for the field, indicating that continuous, longitudinal, and non-invasive monitoring of various parameters in group-housed small rodents within their home cages is within reach. By monitoring animals in their home cages over extended periods, we can capture a more accurate representation of their natural behavior and physiological responses. This not only enhances the reliability of our findings but also opens up new possibilities for studying a broader array of parameters in a group setting. The implications of this research extend beyond mere technological progress. The ability to monitor animals continuously within their familiar environment holds the potential to revolutionize experimental designs, offering a more comprehensive understanding of the impact of various interventions and stimuli. As the field of HCM continues to evolve, researchers anticipate further refinements and validations of monitoring systems. These improvements will inevitably broaden the applications of HCM, allowing for a nuanced understanding of the intricacies of animal behavior and physiology over time.

In conclusion, the paper signifies a pivotal moment in biomedical research, highlighting the strides made in home-cage monitoring technology and hinting at a future where the continuous observation of small rodents within their home cages becomes standard practice in laboratories worldwide.

I was privileged to present the groundbreaking TEATIME Action at the 5th Congress of the Society for Laboratory Animals of Slovenia and the 3rd joint SLAS – CroLASA meeting on June 15, 2023, in Ljubljana, Slovenia. My lecture focused on the transformative potential of automated behavior monitoring in the home cages of laboratory animals, particularly mice and rats, aiming to elevate the standards of biomedical research.

TEATIME Action, launched in 2021 and spanning 34 European countries, unites experts in mouse behavior, data science, and animal welfare. Focused on home cage monitoring (HCM) technologies, it aims to enhance the reliability of measures in laboratory rodents, setting standards for ethical preclinical research. TEATIME fosters collaboration through surveys and a systematic review, providing a catalog of HCM systems and offering training programs. This initiative not only refines experimental conditions and reduces animal use but also builds a diverse, interconnected network for a more ethical and efficient future in biomedical research. The abstract of the lecture can be found in the Book of Abstracts (1 (slas.si)).

As the topic unfolded, I was delighted to witness the audience’s curiosity ignite. The flood of questions that followed indicated a genuine interest in the subject. What thrilled me even more was the realization that the information shared was breaking new ground for many researchers. Some attendees were encountering the fascinating realm of Home Cage Monitoring (HCM) systems for the first time. The allure of our shared mission—improving research using laboratory animals—resonated with fellow researchers. Many expressed not only their desire to learn more but also their interest in joining our Action. It’s the kind of collaborative spirit that propels our collective pursuit of knowledge forward. The exchange of ideas and the prospect of forging new connections left me inspired and excited about the collective journey ahead.

dr. Maša Čater
Biotechnical faculty
University of Ljubljana
Slovenia

COST-TEATIME Newsletter, July 2023

Dear colleagues,

Welcome to the TEATIME COST Action newsletter for improving biomedical research by automated behaviour monitoring in the animal home-cage. In this edition we are pleased to announce the launch of the new Home Cage Monitoring Forum.  We apologise and have corrected the link to Silvia Mandillo’s Grant Report from the previous edition; please use the link in this edition to read her report on the 8th Mediterranean Neuroscience Society (MNS).

Our Behaviour Forum has been launched
We are pleased to inform you all that our Forum is now available for you to join the discussion, share ideas, and get support. Please use the QR code to find the Forum.
The Behaviour Forum
TEATIME Grant Reports
TEATIME has awarded eight grants to individuals this year to undertake Short-term Scientific Missions (STSM) to visit labs in countries other than their own. Recent reports are included here.
ITC Grant Report
Mailis Carrilho presenting her research at the 17th Rodens et Spatim – International Conference on Rodent Biology in Spain.
STSM Grant Reports
Alice Melloni visited Prof Stuart Peirson’s laboratory in Oxford and discussed the setups dedicated to behavioural testing.

Lionie Pakulat visited Nuno Franco’s laboratory at the University of Porto and discussed the automated cages for mice.

TEATIME Dissemination Grant Reports
Aleksandra Bartelik with a TEATIME presentation at Central-East European Laboratory Animal Science Congress, Prague.

Silvia Mandillo was awarded our first TEATIME Dissemination grant which enabled her to attend the 8th Mediterranean Neuroscience Society (MNS) Conference Dubrovnik, Croatia. We are delighted to share her report in this newsletter.

Read more about our grants
TEATIME Webinars

A critical review of conventional models of depression and alternative approaches to studying emotional behaviour in non-human species. Emma Robinson. Radial maze without food deprivation: a new, automated, stress-free and voluntary test for assessment of spatial memory in mice. Dr Jie Mei.

Watch our webinars
Training School workshop
In July 2023 we held our second workshop to offer education, advice, networking, and training in Home Cage Monitoring to academic researchers. We were pleased to welcome 24 students from across 13 different European countries. A full report will be published in our Autumn newsletter.

We hope you have found this newsletter interesting and informative. We would be very happy to hear from any of you with feedback and comments. Please also share this newsletter with your colleagues and if you have been forwarded this email and don’t want to miss future newsletters, then please subscribe. All new webinars will be announced on the website and via Twitter 2-3 weeks before the event so please watch the space!

On behalf of all members of the TEATIME Action,

Vootele Voikar – TEATIME Chair
Sara Wells – Grant Holder, TEATIME Vice-chair
Sabine Hölter-Koch – Science Communication Coordinator
Twitter
LinkedIn
YouTube
Website
Website